PoplarV1, Main, Exploration, bibRecord, 003B87

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.

Identifieur interne : 003B87 ( Main/Exploration ); précédent : 003B86; suivant : 003B88

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.

Auteurs : Tokihiko Nanjo [Japon] ; Tetsuya Sakurai ; Yasushi Totoki ; Atsushi Toyoda ; Mitsuru Nishiguchi ; Tomoyuki Kado ; Tomohiro Igasaki ; Norihiro Futamura ; Motoaki Seki ; Yoshiyuki Sakaki ; Kazuo Shinozaki ; Kenji Shinohara

Source :

BMC genomics [ 1471-2164 ] ; 2007.

RBID : pubmed:18053163

Descripteurs français

KwdFr :
- ADN complémentaire (analyse), ADN complémentaire (classification), ADN complémentaire (physiologie), Algorithmes (MeSH), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Banque de gènes (MeSH), Bases de données génétiques (MeSH), Cartographie chromosomique (MeSH), Chromosomes de plante (MeSH), Clonage moléculaire (méthodes), Gènes de plante (physiologie), Génome végétal (MeSH), Populus (génétique).
MESH :
- analyse : ADN complémentaire.
- classification : ADN complémentaire.
- génétique : Populus.
- méthodes : Clonage moléculaire.
- physiologie : ADN complémentaire, Gènes de plante.
- Algorithmes, Analyse de regroupements, Analyse de séquence d'ADN, Banque de gènes, Bases de données génétiques, Cartographie chromosomique, Chromosomes de plante, Génome végétal.

English descriptors

KwdEn :
- Algorithms (MeSH), Chromosome Mapping (MeSH), Chromosomes, Plant (MeSH), Cloning, Molecular (methods), Cluster Analysis (MeSH), DNA, Complementary (analysis), DNA, Complementary (classification), DNA, Complementary (physiology), Databases, Genetic (MeSH), Gene Library (MeSH), Genes, Plant (physiology), Genome, Plant (MeSH), Populus (genetics), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , analysis : DNA, Complementary.
- chemical , classification : DNA, Complementary.
- genetics : Populus.
- methods : Cloning, Molecular.
- chemical , physiology : DNA, Complementary, Genes, Plant.
- Algorithms, Chromosome Mapping, Chromosomes, Plant, Cluster Analysis, Databases, Genetic, Gene Library, Genome, Plant, Sequence Analysis, DNA.

Abstract

BACKGROUND

Populus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era, functional genomics of Populus is getting more important for well-comprehended plant science. Development of bioresorce serving functional genomics is making rapid progress. Huge efforts have achieved deposits of expressed sequence tags (ESTs) in various plant species consequently accelerating functional analysis of genes. ESTs from full-length cDNA clones are especially powerful for accurate molecular annotation. We promoted collection and annotation of the ESTs from Populus full-length enriched cDNA clones as part of functional genomics of tree species.

RESULTS

We have been collecting the full-length enriched cDNA of the female poplar (Populus nigra var. italica) for years. By sequencing P. nigra full-length (PnFL) cDNA libraries, we generated about 116,000 5'-end or 3'-end ESTs corresponding to 19,841 nonredundant PnFL clones. Population of PnFL cDNA clones represents 44% of the predicted genes in the Populus genome.

CONCLUSION

Our resource of P. nigra full-length enriched clones is expected to provide valuable tools to gain further insight into genome annotation and functional genomics in Populus.

DOI: 10.1186/1471-2164-8-448
PubMed: 18053163
PubMed Central: PMC2222646

Affiliations:

Japon

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003A02
to stream Main, to step Curation: 003A02

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.</title>
<author><name sortKey="Nanjo, Tokihiko" sort="Nanjo, Tokihiko" uniqKey="Nanjo T" first="Tokihiko" last="Nanjo">Tokihiko Nanjo</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute (FFPRI), 1 Matsunosato, Tsukuba, Ibaraki 305-8687 JAPAN. nanjo@affrc.go.jp</nlm:affiliation>
<country wicri:rule="url">Japon</country>
</affiliation>
</author>
<author><name sortKey="Sakurai, Tetsuya" sort="Sakurai, Tetsuya" uniqKey="Sakurai T" first="Tetsuya" last="Sakurai">Tetsuya Sakurai</name>
</author>
<author><name sortKey="Totoki, Yasushi" sort="Totoki, Yasushi" uniqKey="Totoki Y" first="Yasushi" last="Totoki">Yasushi Totoki</name>
</author>
<author><name sortKey="Toyoda, Atsushi" sort="Toyoda, Atsushi" uniqKey="Toyoda A" first="Atsushi" last="Toyoda">Atsushi Toyoda</name>
</author>
<author><name sortKey="Nishiguchi, Mitsuru" sort="Nishiguchi, Mitsuru" uniqKey="Nishiguchi M" first="Mitsuru" last="Nishiguchi">Mitsuru Nishiguchi</name>
</author>
<author><name sortKey="Kado, Tomoyuki" sort="Kado, Tomoyuki" uniqKey="Kado T" first="Tomoyuki" last="Kado">Tomoyuki Kado</name>
</author>
<author><name sortKey="Igasaki, Tomohiro" sort="Igasaki, Tomohiro" uniqKey="Igasaki T" first="Tomohiro" last="Igasaki">Tomohiro Igasaki</name>
</author>
<author><name sortKey="Futamura, Norihiro" sort="Futamura, Norihiro" uniqKey="Futamura N" first="Norihiro" last="Futamura">Norihiro Futamura</name>
</author>
<author><name sortKey="Seki, Motoaki" sort="Seki, Motoaki" uniqKey="Seki M" first="Motoaki" last="Seki">Motoaki Seki</name>
</author>
<author><name sortKey="Sakaki, Yoshiyuki" sort="Sakaki, Yoshiyuki" uniqKey="Sakaki Y" first="Yoshiyuki" last="Sakaki">Yoshiyuki Sakaki</name>
</author>
<author><name sortKey="Shinozaki, Kazuo" sort="Shinozaki, Kazuo" uniqKey="Shinozaki K" first="Kazuo" last="Shinozaki">Kazuo Shinozaki</name>
</author>
<author><name sortKey="Shinohara, Kenji" sort="Shinohara, Kenji" uniqKey="Shinohara K" first="Kenji" last="Shinohara">Kenji Shinohara</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2007">2007</date>
<idno type="RBID">pubmed:18053163</idno>
<idno type="pmid">18053163</idno>
<idno type="doi">10.1186/1471-2164-8-448</idno>
<idno type="pmc">PMC2222646</idno>
<idno type="wicri:Area/Main/Corpus">003A02</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003A02</idno>
<idno type="wicri:Area/Main/Curation">003A02</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003A02</idno>
<idno type="wicri:Area/Main/Exploration">003A02</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.</title>
<author><name sortKey="Nanjo, Tokihiko" sort="Nanjo, Tokihiko" uniqKey="Nanjo T" first="Tokihiko" last="Nanjo">Tokihiko Nanjo</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute (FFPRI), 1 Matsunosato, Tsukuba, Ibaraki 305-8687 JAPAN. nanjo@affrc.go.jp</nlm:affiliation>
<country wicri:rule="url">Japon</country>
</affiliation>
</author>
<author><name sortKey="Sakurai, Tetsuya" sort="Sakurai, Tetsuya" uniqKey="Sakurai T" first="Tetsuya" last="Sakurai">Tetsuya Sakurai</name>
</author>
<author><name sortKey="Totoki, Yasushi" sort="Totoki, Yasushi" uniqKey="Totoki Y" first="Yasushi" last="Totoki">Yasushi Totoki</name>
</author>
<author><name sortKey="Toyoda, Atsushi" sort="Toyoda, Atsushi" uniqKey="Toyoda A" first="Atsushi" last="Toyoda">Atsushi Toyoda</name>
</author>
<author><name sortKey="Nishiguchi, Mitsuru" sort="Nishiguchi, Mitsuru" uniqKey="Nishiguchi M" first="Mitsuru" last="Nishiguchi">Mitsuru Nishiguchi</name>
</author>
<author><name sortKey="Kado, Tomoyuki" sort="Kado, Tomoyuki" uniqKey="Kado T" first="Tomoyuki" last="Kado">Tomoyuki Kado</name>
</author>
<author><name sortKey="Igasaki, Tomohiro" sort="Igasaki, Tomohiro" uniqKey="Igasaki T" first="Tomohiro" last="Igasaki">Tomohiro Igasaki</name>
</author>
<author><name sortKey="Futamura, Norihiro" sort="Futamura, Norihiro" uniqKey="Futamura N" first="Norihiro" last="Futamura">Norihiro Futamura</name>
</author>
<author><name sortKey="Seki, Motoaki" sort="Seki, Motoaki" uniqKey="Seki M" first="Motoaki" last="Seki">Motoaki Seki</name>
</author>
<author><name sortKey="Sakaki, Yoshiyuki" sort="Sakaki, Yoshiyuki" uniqKey="Sakaki Y" first="Yoshiyuki" last="Sakaki">Yoshiyuki Sakaki</name>
</author>
<author><name sortKey="Shinozaki, Kazuo" sort="Shinozaki, Kazuo" uniqKey="Shinozaki K" first="Kazuo" last="Shinozaki">Kazuo Shinozaki</name>
</author>
<author><name sortKey="Shinohara, Kenji" sort="Shinohara, Kenji" uniqKey="Shinohara K" first="Kenji" last="Shinohara">Kenji Shinohara</name>
</author>
</analytic>
<series><title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2007" type="published">2007</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Algorithms (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (MeSH)</term>
<term>Cloning, Molecular (methods)</term>
<term>Cluster Analysis (MeSH)</term>
<term>DNA, Complementary (analysis)</term>
<term>DNA, Complementary (classification)</term>
<term>DNA, Complementary (physiology)</term>
<term>Databases, Genetic (MeSH)</term>
<term>Gene Library (MeSH)</term>
<term>Genes, Plant (physiology)</term>
<term>Genome, Plant (MeSH)</term>
<term>Populus (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (analyse)</term>
<term>ADN complémentaire (classification)</term>
<term>ADN complémentaire (physiologie)</term>
<term>Algorithmes (MeSH)</term>
<term>Analyse de regroupements (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Banque de gènes (MeSH)</term>
<term>Bases de données génétiques (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes de plante (MeSH)</term>
<term>Clonage moléculaire (méthodes)</term>
<term>Gènes de plante (physiologie)</term>
<term>Génome végétal (MeSH)</term>
<term>Populus (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Complementary</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>DNA, Complementary</term>
</keywords>
<keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN complémentaire</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>ADN complémentaire</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Cloning, Molecular</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Clonage moléculaire</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>ADN complémentaire</term>
<term>Gènes de plante</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en"><term>DNA, Complementary</term>
<term>Genes, Plant</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Algorithms</term>
<term>Chromosome Mapping</term>
<term>Chromosomes, Plant</term>
<term>Cluster Analysis</term>
<term>Databases, Genetic</term>
<term>Gene Library</term>
<term>Genome, Plant</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Algorithmes</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Banque de gènes</term>
<term>Bases de données génétiques</term>
<term>Cartographie chromosomique</term>
<term>Chromosomes de plante</term>
<term>Génome végétal</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Populus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era, functional genomics of Populus is getting more important for well-comprehended plant science. Development of bioresorce serving functional genomics is making rapid progress. Huge efforts have achieved deposits of expressed sequence tags (ESTs) in various plant species consequently accelerating functional analysis of genes. ESTs from full-length cDNA clones are especially powerful for accurate molecular annotation. We promoted collection and annotation of the ESTs from Populus full-length enriched cDNA clones as part of functional genomics of tree species.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>We have been collecting the full-length enriched cDNA of the female poplar (Populus nigra var. italica) for years. By sequencing P. nigra full-length (PnFL) cDNA libraries, we generated about 116,000 5'-end or 3'-end ESTs corresponding to 19,841 nonredundant PnFL clones. Population of PnFL cDNA clones represents 44% of the predicted genes in the Populus genome.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSION</b>
</p>
<p>Our resource of P. nigra full-length enriched clones is expected to provide valuable tools to gain further insight into genome annotation and functional genomics in Populus.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18053163</PMID>
<DateCompleted><Year>2008</Year>
<Month>03</Month>
<Day>07</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>8</Volume>
<PubDate><Year>2007</Year>
<Month>Dec</Month>
<Day>03</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.</ArticleTitle>
<Pagination><MedlinePgn>448</MedlinePgn>
</Pagination>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Populus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era, functional genomics of Populus is getting more important for well-comprehended plant science. Development of bioresorce serving functional genomics is making rapid progress. Huge efforts have achieved deposits of expressed sequence tags (ESTs) in various plant species consequently accelerating functional analysis of genes. ESTs from full-length cDNA clones are especially powerful for accurate molecular annotation. We promoted collection and annotation of the ESTs from Populus full-length enriched cDNA clones as part of functional genomics of tree species.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We have been collecting the full-length enriched cDNA of the female poplar (Populus nigra var. italica) for years. By sequencing P. nigra full-length (PnFL) cDNA libraries, we generated about 116,000 5'-end or 3'-end ESTs corresponding to 19,841 nonredundant PnFL clones. Population of PnFL cDNA clones represents 44% of the predicted genes in the Populus genome.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Our resource of P. nigra full-length enriched clones is expected to provide valuable tools to gain further insight into genome annotation and functional genomics in Populus.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Nanjo</LastName>
<ForeName>Tokihiko</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute (FFPRI), 1 Matsunosato, Tsukuba, Ibaraki 305-8687 JAPAN. nanjo@affrc.go.jp</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sakurai</LastName>
<ForeName>Tetsuya</ForeName>
<Initials>T</Initials>
</Author>
<Author ValidYN="Y"><LastName>Totoki</LastName>
<ForeName>Yasushi</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Toyoda</LastName>
<ForeName>Atsushi</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y"><LastName>Nishiguchi</LastName>
<ForeName>Mitsuru</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Kado</LastName>
<ForeName>Tomoyuki</ForeName>
<Initials>T</Initials>
</Author>
<Author ValidYN="Y"><LastName>Igasaki</LastName>
<ForeName>Tomohiro</ForeName>
<Initials>T</Initials>
</Author>
<Author ValidYN="Y"><LastName>Futamura</LastName>
<ForeName>Norihiro</ForeName>
<Initials>N</Initials>
</Author>
<Author ValidYN="Y"><LastName>Seki</LastName>
<ForeName>Motoaki</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Sakaki</LastName>
<ForeName>Yoshiyuki</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Shinozaki</LastName>
<ForeName>Kazuo</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y"><LastName>Shinohara</LastName>
<ForeName>Kenji</ForeName>
<Initials>K</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2007</Year>
<Month>12</Month>
<Day>03</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>BMC Genomics</MedlineTA>
<NlmUniqueID>100965258</NlmUniqueID>
<ISSNLinking>1471-2164</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D018076">DNA, Complementary</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000465" MajorTopicYN="N">Algorithms</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018076" MajorTopicYN="N">DNA, Complementary</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="Y">analysis</QualifierName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D030541" MajorTopicYN="Y">Databases, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015723" MajorTopicYN="N">Gene Library</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2007</Year>
<Month>07</Month>
<Day>19</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2007</Year>
<Month>12</Month>
<Day>03</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2007</Year>
<Month>12</Month>
<Day>7</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2008</Year>
<Month>3</Month>
<Day>8</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2007</Year>
<Month>12</Month>
<Day>7</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">18053163</ArticleId>
<ArticleId IdType="pii">1471-2164-8-448</ArticleId>
<ArticleId IdType="doi">10.1186/1471-2164-8-448</ArticleId>
<ArticleId IdType="pmc">PMC2222646</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Nucleic Acids Res. 2000 Jan 1;28(1):33-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10592175</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2001 Feb;11(2):281-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11157791</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14732-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11724959</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2002 Jan 1;30(1):328-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11752328</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2002 Apr 5;296(5565):141-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11910074</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trends Biochem Sci. 2002 May;27(5):266-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12076540</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2002 Jul;12(7):1127-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12097351</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2002 Aug;12(8):1294-300</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12176937</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2002 Nov;14(11):2651-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12417692</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2003 Feb;131(2):430-42</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12586868</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEBS Lett. 2003 May 8;542(1-3):37-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12729894</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):8007-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12808149</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 Jul 18;301(5631):376-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12869764</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2003 Sep 11;4:41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12969510</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Biol (Stuttg). 2004 Jan-Feb;6(1):55-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15095135</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13951-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15353603</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2004 Oct;40(2):173-87</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15447645</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13330-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9789088</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Planta. 2004 Dec;220(2):296-306</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15378367</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Planta. 2004 Oct;219(6):936-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15605173</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell Physiol. 2004 Dec;45(12):1738-48</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15653793</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2006 Apr;15(5):1275-97</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16626454</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2000 Oct;10(10):1617-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11042159</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Japon</li>
</country>
</list>
<tree><noCountry><name sortKey="Futamura, Norihiro" sort="Futamura, Norihiro" uniqKey="Futamura N" first="Norihiro" last="Futamura">Norihiro Futamura</name>
<name sortKey="Igasaki, Tomohiro" sort="Igasaki, Tomohiro" uniqKey="Igasaki T" first="Tomohiro" last="Igasaki">Tomohiro Igasaki</name>
<name sortKey="Kado, Tomoyuki" sort="Kado, Tomoyuki" uniqKey="Kado T" first="Tomoyuki" last="Kado">Tomoyuki Kado</name>
<name sortKey="Nishiguchi, Mitsuru" sort="Nishiguchi, Mitsuru" uniqKey="Nishiguchi M" first="Mitsuru" last="Nishiguchi">Mitsuru Nishiguchi</name>
<name sortKey="Sakaki, Yoshiyuki" sort="Sakaki, Yoshiyuki" uniqKey="Sakaki Y" first="Yoshiyuki" last="Sakaki">Yoshiyuki Sakaki</name>
<name sortKey="Sakurai, Tetsuya" sort="Sakurai, Tetsuya" uniqKey="Sakurai T" first="Tetsuya" last="Sakurai">Tetsuya Sakurai</name>
<name sortKey="Seki, Motoaki" sort="Seki, Motoaki" uniqKey="Seki M" first="Motoaki" last="Seki">Motoaki Seki</name>
<name sortKey="Shinohara, Kenji" sort="Shinohara, Kenji" uniqKey="Shinohara K" first="Kenji" last="Shinohara">Kenji Shinohara</name>
<name sortKey="Shinozaki, Kazuo" sort="Shinozaki, Kazuo" uniqKey="Shinozaki K" first="Kazuo" last="Shinozaki">Kazuo Shinozaki</name>
<name sortKey="Totoki, Yasushi" sort="Totoki, Yasushi" uniqKey="Totoki Y" first="Yasushi" last="Totoki">Yasushi Totoki</name>
<name sortKey="Toyoda, Atsushi" sort="Toyoda, Atsushi" uniqKey="Toyoda A" first="Atsushi" last="Toyoda">Atsushi Toyoda</name>
</noCountry>
<country name="Japon"><noRegion><name sortKey="Nanjo, Tokihiko" sort="Nanjo, Tokihiko" uniqKey="Nanjo T" first="Tokihiko" last="Nanjo">Tokihiko Nanjo</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003B87 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003B87 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:18053163
   |texte=   Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:18053163" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020

	Serveur d'exploration sur le peuplier
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur le peuplier

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki